Re: [Freesurfer] Talairach transformations in tkmedit and tkregister2

2007-10-17 Thread Nick Schmansky
Claudia, This might be the bug that was fixed in freesurfer v4.0.1. The workaround for this (if not using the tkmedit in v4.0.1) is to load the talairach.lta file instead (or use tkregister2 and load talairach.xfm, as you have discovered). Nick > Ohps! Sorry, it is the talairach.xfm file loaded

Re: [Freesurfer] Talairach transformations in tkmedit and tkregister2

2007-10-17 Thread Dr. Claudia Wheeler-Kingshott
Ohps! Sorry, it is the talairach.xfm file loaded in tkmedit as explained on the tutorial page. Claudia Bruce Fischl wrote: Hi Claudia, I don't think there is a talairach.mgz. Do you mean .m3z? Or .xfm? Or .lta? Sorry for the proliferation of transforms :) Bruce On Tue, 16 Oct 2007, Dr. Cl

Re: [Freesurfer] Talairach transformations in tkmedit and tkregister2

2007-10-17 Thread Bruce Fischl
Hi Claudia, I don't think there is a talairach.mgz. Do you mean .m3z? Or .xfm? Or .lta? Sorry for the proliferation of transforms :) Bruce On Tue, 16 Oct 2007, Dr. Claudia Wheeler-Kingshott wrote: Hi, We have a problem with the Talairach transformations. When we load the talairach.mgz f

[Freesurfer] Talairach transformations in tkmedit and tkregister2

2007-10-16 Thread Dr. Claudia Wheeler-Kingshott
Hi, We have a problem with the Talairach transformations. When we load the talairach.mgz file using tkmedit the axial and coronal orientations are swapped and displaced in the window. The puzzling thing is that if we use tkregister2, the registration is very good. Any idea of why? I found a