Re: [Freesurfer] TRACULA dwi flipping

2014-12-16 Thread Barbara Kreilkamp
Thank you Anastasia. Best wishes, Barbara On 21/11/2014 21:45, Anastasia Yendiki wrote: > Hi Barbara - It's converting to LAS orientation. If it the images are > already in LAS orientation, that command will have no effect, as you say. > > a.y > > On Fri, 17 Oct 2014, Barbara Kreilkamp wrote: > >

Re: [Freesurfer] TRACULA dwi flipping

2014-11-21 Thread Anastasia Yendiki
Hi Barbara - It's converting to LAS orientation. If it the images are already in LAS orientation, that command will have no effect, as you say. a.y On Fri, 17 Oct 2014, Barbara Kreilkamp wrote: > Dear all, > > Would you please explain why TRACULA is flipping the data so often? And > what does

[Freesurfer] TRACULA dwi flipping

2014-10-17 Thread Barbara Kreilkamp
Dear all, Would you please explain why TRACULA is flipping the data so often? And what does the flip4fsl command do? The data I have is already in the right (radiological) orientation. fslswapdim does not seem to have an effect either, as the parameters are just set to 'x y z'. Are these comman