hey doug,
fslregister already uses flirt.fsl from freesurfer. you only need to
provide the schedule file and update the path. i just ran it copying the
schedule file over from fsl to a new location and setting the environment
variable FSLDIR, which i presume could be replaced with FREESURFER_HOME.
hi doug,
same error with the updated one when i don't have FSL installed.
writing to
/data/subjects/H0351.2002/mri/transforms/tmp.bbregister.7856/template.nii...
fslregister --s H0351.2002 --mov
/data/subjects/H0351.2002/mri/transforms/tmp.bbregister.7856/template.nii
--re
g /data/subjects/H0351.
thanks doug, i'll try that version right now.
cheers,
satra
On Fri, Jul 5, 2013 at 11:37 AM, Douglas N Greve
wrote:
> I think the problem may be this:
>
> WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
>
> you can also update bbregister with the version here
>
> ftp://surfer.n
I think the problem may be this:
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
you can also update bbregister with the version here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/bbregister
doug
On 07/05/2013 09:55 AM, Satrajit Ghosh wrote:
> hi doug,
>
> b
hi doug,
bbregister was running into an error trying to do T2pial refinement
sequence of commands and output here:
https://gist.github.com/satra/5934639
and it looks like the absence of FSLDIR
i didn't have FSL installed on this machine - i thought that freesurfer had
it's own version of flirt
