Re: [Freesurfer] T1 stats output name confused

2020-06-24 Thread Douglas N. Greve
There is not an aparc+aseg.stats (though you could create one), but it does segment into more than just GM, WM, and CSF On 6/23/2020 10:12 PM, Zeng, Qi wrote: External Email - Use Caution Hi Douglas, So basically, aparc+aseg.stats are generated from aparc+aseg.mgz, which segment T1-

Re: [Freesurfer] T1 stats output name confused

2020-06-23 Thread Zeng, Qi
External Email - Use Caution Hi Douglas, So basically, aparc+aseg.stats are generated from aparc+aseg.mgz, which segment T1-weighted image into gray matter, white matter, ventricles, non-ventricular cerebrospinal fluid and lesion. Is that correct? Thank you ! Best, Qi On Mon, Ju

Re: [Freesurfer] T1 stats output name confused

2020-06-15 Thread Douglas N. Greve
I'm not sure what you mean. Are you looking for a single file that contains all the info? If so, the answer is no, we do not output such a file On 6/13/2020 5:10 PM, Zeng, Qi wrote: External Email - Use Caution So from what I understand, there is no straightforward file containing wh

Re: [Freesurfer] T1 stats output name confused

2020-06-13 Thread Zeng, Qi
External Email - Use Caution So from what I understand, there is no straightforward file containing white matter and grey matter stats. Is that correct? Best, Qi On Fri, Jun 12, 2020 at 5:45 PM Douglas N. Greve wrote: > seg is usually a volume-based segmentation (like the aseg)

Re: [Freesurfer] T1 stats output name confused

2020-06-12 Thread Douglas N. Greve
seg is usually a volume-based segmentation (like the aseg) parc is usually a surface-based segmentation (like lh.aparc.annot) unfortunately, I misnamed "wmparc". It is a volume-based segmentation that incorporates surface-based information On 6/12/2020 3:12 PM, Zeng, Qi wrote: Externa

[Freesurfer] T1 stats output name confused

2020-06-12 Thread Zeng, Qi
External Email - Use Caution Hi All, I am a little confused with the stats output. So seg/aparc are cortical white /grey matter and wmparc are subcortical white matter. Is that correct? Best, Qi ___ Freesurfer mailing list Freesurfer@nm