Re: [Freesurfer] Surface statistics for PET

2012-08-26 Thread Bruce Fischl
/index.html  Is there a workaround to view inflated functional data mapped using mri_vol2surf with a .mgh file? Thank you again, Daniel Message: 6 Date: Fri, 24 Aug 2012 18:57:55 -0400 From: Douglas N Greve Subject: Re: [Freesurfer] Surface statistics for PET To: freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Surface statistics for PET

2012-08-24 Thread Douglas N Greve
You can use mri_segstats for this, something like mri_segstats --annot subject lh aparc --i lh.pet.mgh --sum sum.dat where lh.pet.mgh is the surface-sampled pet BTW, unless you need a .w for something, use a .mgh file (the .w is becoming obsolete). doug On 08/23/2012 07:27 PM, Daniel Tarquinio

[Freesurfer] Surface statistics for PET

2012-08-23 Thread Daniel Tarquinio
I would like to calculate average PET intensities for specific labels (using the aparc.annot label files). I have coregistered and used mri_vol2surf to assign PET values to the FS generated surface, and viewed the results using qsurfer. The next step is to take the values from the .w files an