Re: [Freesurfer] Slim down FS6 (Marmaduke Woodman)

> On 5 Feb 2017, at 19:07, Alex Cohen wrote: > > Have you looked at the modifications for the BIDS App version: > > https://github.com/BIDS-Apps/freesurfer > No, I admittedly didn't Google hard before asking, but this is a great example to work from.

Re: [Freesurfer] Slim down FS6 (Marmaduke Woodman)

Have you looked at the modifications for the BIDS App version: https://github.com/BIDS-Apps/freesurfer I believe the latest image (using FS6) is only 6.37GB and you could bypass the run.py script with --entrypoint bash to run your typical recon-all commands -Alex -