anks,
Emma
From: MATEUS ROZALEM ARANHA
Sent: Thursday, August 17, 2017 6:18:28 AM
To: Freesurfer support list; Boyd, Emma
Subject: Re: [Freesurfer] Skullstriping problems
Hi Emma,
Could you take a look at the recon-all.log file I sent you?
Best
Mateus
Enviado do meu iPhone
Em 11
t;
> Best,
>
> Emma
>
>
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> on behalf of MATEUS ROZALEM ARANHA
>
> Sent: Friday, August 11, 2017 9:56 AM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: [Freesurfer] Skullstriping problems
>
> Hi,
>
> I h
Subject: [Freesurfer] Skullstriping problems
Hi,
I had problems with skullstriping. I ran recon-all and part of the skull is
being considered as cortex in the segmentation. I tried to fix this using:
recon-all -skullstrip -wsthresh 50 -clean-bm -subjid
and than
recon-all -autorecon-pial
Hi,
I had problems with skullstriping. I ran recon-all and part of the skull is
being considered as cortex in the segmentation. I tried to fix this using:
*recon-all -skullstrip -wsthresh 50 -clean-bm -subjid *
and than
*recon-all -autorecon-pial -subjid *
But nothing changed.
Do I need to ru
