Hi Bruce,
I performed the -autorecon-pial as a means of regenerating the surfaces as
instructed on the Freesurfer skull strip tutorial. The brainmask.mgz file does
not have the skull but it has some dura left over. The issue I had before was
that the skull would re-appear after the subject fin
Hi Arsenije,
-autorecon-pial should not recreate the brainmask. Is the brainmask.mgz
currently correct?
Bruce
On Tue, 21 Nov 2017, Arsenije Subotic wrote:
Dear experts,
I recently finished processing a subject for whom I had performed a skullstrip
on the brainmask
volume. I decreased t
Dear experts,
I recently finished processing a subject for whom I had performed a skullstrip
on the brainmask volume. I decreased the watershed parameter and re-examined
the brainmask and the portion of the skull was gone, although some dura was
left over. I did a recon-all using the following
