Re: [Freesurfer] Skull stripped MNI305

2013-07-22 Thread Fotiadis, Panagiotis
mr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Monday, July 22, 2013 12:24 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Skull stripped MNI305 > > Try $SUBJECTS_DIR/fsaverage/mri/b

Re: [Freesurfer] Skull stripped MNI305

2013-07-22 Thread Douglas N Greve
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Monday, July 22, 2013 12:24 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Skull stripped MNI305 > > Try $SUBJECTS_DIR/fsaverage/mri/brain.mgz >

Re: [Freesurfer] Skull stripped MNI305

2013-07-22 Thread Fotiadis, Panagiotis
: Monday, July 22, 2013 12:24 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Skull stripped MNI305 Try $SUBJECTS_DIR/fsaverage/mri/brain.mgz doug On 07/19/2013 03:06 PM, Fotiadis, Panagiotis wrote: > Hi, > > I was wondering if there is a skull stripped version of the file >

Re: [Freesurfer] Skull stripped MNI305

2013-07-22 Thread Douglas N Greve
Try $SUBJECTS_DIR/fsaverage/mri/brain.mgz doug On 07/19/2013 03:06 PM, Fotiadis, Panagiotis wrote: > Hi, > > I was wondering if there is a skull stripped version of the file > /usr/local/freesurfer/stable5_0_0/average/mni305.cor.mgz stored anywhere. I > tried applying bet and mri_watershed on t

[Freesurfer] Skull stripped MNI305

2013-07-19 Thread Fotiadis, Panagiotis
Hi, I was wondering if there is a skull stripped version of the file /usr/local/freesurfer/stable5_0_0/average/mni305.cor.mgz stored anywhere. I tried applying bet and mri_watershed on the mni305.cor.mgz file (with different frequencies as well) but there were still parts of the skull showing.