Re: [Freesurfer] Skull strip and white matter

2012-03-21 Thread Bruce Fischl
Hi Vincent is it affecting the surfaces? If not you can ignore it. Otherwise you might try the graph cuts skull stripping and/or changing the preflooding heights cheers Bruce On Wed, 21 Mar 2012, Vincent wrote: Hi, I am having an issue where some dura remains behind after the skull strip a

[Freesurfer] Skull strip and white matter

2012-03-21 Thread Vincent
Hi, I am having an issue where some dura remains behind after the skull strip and is being mistakenly classified as white matter. Since it is just dura, and not skull, would it be better to edit the white matter volume or should I start by adjusting the skull strip since occurs earlier in the rec