Re: [Freesurfer] Set up data for longitudinal processing

2013-03-29 Thread Martin Reuter
Hi Luke, if T1A is your first time point and T1B the second, you need to do the second (create a directory for each). The first is doing something very different, it is using both inputs for a single reconstruction, by averaging the inputs. Best, Martin On 03/28/2013 12:58 PM, lukas.sch...

Re: [Freesurfer] Set up data for longitudinal processing

2013-03-28 Thread Bruce Fischl
Hi Luke if I understand you properly the second way it the correct way (assuming T1A.nii and T1b.nii are two timepoints for a subject). I think you have a typo though as your second recon-all should use T1B.nii as input. cheers Bruce On Thu, 28 Mar 2013, lukas.sch...@ukb.uni-bonn.de wrote:

[Freesurfer] Set up data for longitudinal processing

2013-03-28 Thread Lukas . Scheef
Hi folks, sorry it's me again with a very basic question. What is the best way to import longitudinal data? recon-all -i /path/T1A.nii -i /path/T1B.nii FIRSTSUBJECT or recon-all -i /path/T1A.nii FIRSTSUBJECT_A recon-all -i /path/T1A.nii FIRSTSUBJECT_B I tend to use the second choice because