Re: [Freesurfer] Segmentation fault (core dumped) error

2017-05-29 Thread Jens Offenbach
x range to be [126, 130] in xformed coordinates > best xformed slice 128 > cc center is found at 128 117 99 > eigenvectors: > 0.00099 0.00201 1.0; > -0.30008 -0.95391 0.00221; > 0.95391 -0.30008 -0.00034; > Segmentation fault (core dumped) > Linux neuroimaging01 4.8.0-52-g

Re: [Freesurfer] Segmentation fault (core dumped) error

2017-05-29 Thread Bruce Fischl
matic section. I will report, if the issue appears there, too. Regards, Jens   Gesendet: Montag, 29. Mai 2017 um 07:41 Uhr Von: "Jens Offenbach" An: freesurfer@nmr.mgh.harvard.edu Cc: "Freesurfer support list" Betreff: Re: [Freesurfer] Segmentation fault (core dumped) error I

Re: [Freesurfer] Segmentation fault (core dumped) error

2017-05-28 Thread Jens Offenbach
An: freesurfer@nmr.mgh.harvard.edu Cc: "Freesurfer support list" Betreff: Re: [Freesurfer] Segmentation fault (core dumped) error I am facing a similar issue with recon-all in FreeSurfer 6.0.0. on two subjects from OASIS-Brains. I will retry the run. This is the last log entry: mri_cc -aseg

Re: [Freesurfer] Segmentation fault (core dumped) error

2017-05-28 Thread Jens Offenbach
: Freitag, 26. Mai 2017 um 15:52 Uhr Von: "Devin Sodums" An: "Freesurfer support list" Betreff: Re: [Freesurfer] Segmentation fault (core dumped) error Sure thing, I’ll send it in a few. Thanks, Devin   From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr

Re: [Freesurfer] Segmentation fault (core dumped) error

2017-05-26 Thread Devin Sodums
Sure thing, I'll send it in a few. Thanks, Devin From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve Sent: Friday, May 26, 2017 9:49 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Segmentation fault (core d

Re: [Freesurfer] Segmentation fault (core dumped) error

2017-05-26 Thread Douglas Greve
No idea. Can you upload the subject so I can take a closer look? https://gate.nmr.mgh.harvard.edu/filedrop2 On 5/26/17 9:35 AM, Devin Sodums wrote: Hello FreeSurfer developers, I’m attempting to run recon-all on a T1 image and keep getting the same error message: Segmentation fault (core d

Re: [Freesurfer] segmentation fault (core dumped) error during autorecon2 step

2006-02-03 Thread Nick Schmansky
Renat, You should try running the centos4 build of freesurfer on Fedora Core 3. The wiki site incorrectly stated to use the rh9 build with fc3, but after speaking with our sysadmin, apparently Fedora Core 3 (fc3) is closer in likeness to Centos4, so you may want to give the centos4 build a try.