Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Douglas N Greve
...@nmr.mgh.harvard.edu] >> Sent: Tuesday, July 25, 2017 10:21 PM >> To: Freesurfer support list >> Subject: Re: [Freesurfer] Segmentation Violation problem in surface files >> >> you can convert the overlays directly to nifti, but they aren't surfaces >> - they are sc

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Yagmur Ozdemir 19
] Sent: Tuesday, July 25, 2017 11:00 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Segmentation Violation problem in surface files what is your command line? On 07/25/2017 03:52 PM, Yagmur Ozdemir 19 wrote: > When I do either of the conversions with mris_convert, the system gi

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Yagmur Ozdemir 19
...@nmr.mgh.harvard.edu] Sent: Tuesday, July 25, 2017 11:00 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Segmentation Violation problem in surface files what is your command line? On 07/25/2017 03:52 PM, Yagmur Ozdemir 19 wrote: > When I do either of the conversions with mris_convert, the sys

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Douglas N Greve
t; Best, > Idil > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Tuesday, July 25, 2017 10:21 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Segmenta

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Yagmur Ozdemir 19
...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Tuesday, July 25, 2017 10:21 PM To: Freesurfer support list Subject: Re: [Freesurfer] Segmentation Violation problem in surface files you can convert the overlays directly to nifti, but they aren't surfaces - they are scalar f

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Bruce Fischl
r-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Tuesday, July 25, 2017 7:47 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Segmentation Violation problem in surface files > > Hi Idil > > I'm not sure what you m

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Yagmur Ozdemir 19
Sent: Tuesday, July 25, 2017 7:47 PM To: Freesurfer support list Subject: Re: [Freesurfer] Segmentation Violation problem in surface files Hi Idil I'm not sure what you mean. If you give us a better idea of your overall goal we can give you more helpful answers I expect Bruce On Tue, 25 Jul 20

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Bruce Fischl
rvard.edu] > Sent: Monday, July 24, 2017 10:36 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Segmentation Violation problem in surface files > > Hi Idil, > > we only store surface overlays in .mgz not surfaces themselves. Try loading > a surface (like lh.infl

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-25 Thread Yagmur Ozdemir 19
-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Monday, July 24, 2017 10:36 PM To: Freesurfer support list Subject: Re: [Freesurfer] Segmentation Violation problem in surface files Hi Idil, we only store surface overlays in .mgz not surfaces themselves. Try loading a su

Re: [Freesurfer] Segmentation Violation problem in surface files

2017-07-24 Thread Bruce Fischl
Hi Idil, we only store surface overlays in .mgz not surfaces themselves. Try loading a surface (like lh.inflated) then load whatever you were looking at as an overlay on the surface cheers Bruce On Mon, 24 Jul 2017, Yagmur Ozdemir 19 wrote: > Hello freesurfer experts, > > I am trying to use

[Freesurfer] Segmentation Violation problem in surface files

2017-07-24 Thread Yagmur Ozdemir 19
Hello freesurfer experts, I am trying to use an occipital lobe template adapted to my data as several surface and volume files, and there seems to be a problem with the surface files. Whenever I try to open a surface overlay (in .mgz format) in freeview this error comes up; freadFloat: fread f