No, there is not an easy way to work around this.
On 09/24/2014 03:01 PM, Celine Louapre wrote:
> Thanks, indeed we used --pvr.
> The command line was:
> mri_glmfit \
> --y ${PATH_DIR}/{surf}.mgh \
> --pvr CT_surf.mgh \
> --fsgd myfsgd.fsgd \
> --C cont.mat \
> --surf fsaverage $hemi \
> --glmdir
Thanks, indeed we used --pvr.
The command line was:
mri_glmfit \
--y ${PATH_DIR}/{surf}.mgh \
--pvr CT_surf.mgh \
--fsgd myfsgd.fsgd \
--C cont.mat \
--surf fsaverage $hemi \
--glmdir outputdir \
--mask mask_minimum_of_subjects.mgh \
--frame-mask mask_for_0_values.mgh \
--no-prune
Would there be a
X and C have different numbers of columns. What was your mri_glmfit
command line? If you used a --pvr, then the pcc script will not work.
doug
On 09/22/2014 01:21 PM, Celine Louapre wrote:
> Thanks for pointing me to the file and the help. I found the info I needed
> there fro the cache.th13.abs
Thanks for pointing me to the file and the help. I found the info I needed
there fro the cache.th13.abs.y.ocn.dat file.
For the partial correlation coefficient script fast_glm_pcc.m I could not
make it run however. I got this error:
Error using *
Inner matrix dimensions must agree.
Error in fas
should be something like cache.th13.abs.y.ocn.dat
also, you can look in mri_glmfit-sim --help to get info about each
output file
On 09/19/2014 04:47 PM, Celine Louapre wrote:
> Indeed I ran mri_glmfit-sim. What file is the output of mri_segstat?
> The cache.th13.abs.sig.ocn.annot contains the
Indeed I ran mri_glmfit-sim. What file is the output of mri_segstat?
The cache.th13.abs.sig.ocn.annot contains the significant clusters it that
correct? So to get individual mean values from cluster 1 for example where
should I look?
Thanks!
Celine
>
> Have you run mri_glmfit-sim? It will create
Have you run mri_glmfit-sim? It will create labels (ie, annotations) of
the clusters as well as run mri_segstats to get means in each cluster
for each subject. Try that link now
doug
On 09/18/2014 12:15 PM, Celine Louapre wrote:
> Hi Doug and FS team
>
> I did glm analyses using mri_glmfit, and
Hi Doug and FS team
I did glm analyses using mri_glmfit, and I was trying to plot the
individual values in the population for a specific significant cluster.
However I am not sure how to extract individual values from the entire
cluster. (note that the concatenated surface used as input for the gl
