Re: [Freesurfer] Saving individual slices within a nifti file

Hi Doug, Thanks for the tips. It is working now. Best, Lisa __ Lisa F. Akiyama Research Study Assistant Institute for Learning & Brain Sciences (I-LABS) University of Washington Portage Bay Building, BOX 357988 Seattle, WA 98195-7988 U.S.A. E-mail: lris...@uw.edu P

Re: [Freesurfer] Saving individual slices within a nifti file

does average_305_test_slice0.nii not exist? Do you have write perms to that dir? I just tried it here, and it works doug Lisa F. Akiyama wrote: > Hi Doug, > > Thanks for the tip. > I ran the following command, but no output was created: > > todd: mri_convert -i > $SUBJECTS_DIR/mni305_min

Re: [Freesurfer] Saving individual slices within a nifti file

Hi Doug, Thanks for the tip. I ran the following command, but no output was created: todd: mri_convert -i $SUBJECTS_DIR/mni305_minc/average_305_test.nii --slice-crop 0 154 -o $SUBJECTS_DIR/mni305_minc/average_305_test_slice0.nii mri_convert -i /usr/local/freesurfer/subjects/mni305_minc/average_30

Re: [Freesurfer] Saving individual slices within a nifti file

Try the --slice-crop option doug Lisa F. Akiyama wrote: > Hello, > > Is there a way to individually save slices within a nifti file in the > nifti format > using the mri_convert command? > > Thank you. > > > Best, > Lisa > __ > Lisa F. Akiyama > Research Study Assist

[Freesurfer] Saving individual slices within a nifti file

Hello, Is there a way to individually save slices within a nifti file in the nifti format using the mri_convert command? Thank you. Best, Lisa __ Lisa F. Akiyama Research Study Assistant Institute for Learning & Brain Sciences (I-LABS) University of Washington E-mai