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Hi Stefano,
Thank you for your reply and explanation.
The command I'm using to segment FLAIR is as follows:
run_samseg --input T2_FLAIR.nii.gz --output samseg_outputs --threads 8
--lesion --lesion-mask-pattern 1 --threshold 0.3 --save-posteriors
--s
Hi Evie,
--save-probabilities and --save-posteriors will save two different things for
lesions. The former is an initialization of lesions based on intensity and
location constraints, and the latter is a probability map of seg.mgz after we
also introduce lesion shape constraints (Cf Fig.4 of
h
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Dear experts,
I am running SAMSEG to segment MS lesions from T2 FLAIR scans. I wanted to
create a lesion mask in order to obtain lesion volumes and lesion counts,
so I used mri_binarize on seg.mgz to obtain all voxels with the value 99.
However, upon v
