Re: [Freesurfer] Salvaging brainmasks

2023-02-01 Thread Douglas N. Greve
You can manually edit them to restore the parts that have been stripped (using the clone feature in freeview). See https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix_freeview On 1/27/2023 5:21 AM, Rakshathi Basavaraju wrote: External Email - Use Caution Dear FS, A f

[Freesurfer] Salvaging brainmasks

2023-01-27 Thread Rakshathi Basavaraju
External Email - Use Caution Dear FS, A few of my brainmasks were excessively stripped and I used watershedding to correct them. Many I could set right. But a few scans despite playing around with different h values if I cannot restore the cut parts of the brainmask what is to be