Re: [Freesurfer] SAMSEG - modification of the template files

2022-09-25 Thread Douglas N. Greve
On 9/25/2022 5:06 AM, Mikolaj Pawlak wrote: External Email - Use Caution On Fri, Sep 23, 2022 at 4:05 PM Douglas N. Greve wrote: On 9/22/2022 8:59 AM, Mikolaj Pawlak wrote: External Email - Use Caution Would providing better manual segmentations of those

Re: [Freesurfer] SAMSEG - modification of the template files

2022-09-25 Thread Mikolaj Pawlak
External Email - Use Caution On Fri, Sep 23, 2022 at 4:05 PM Douglas N. Greve wrote: > > > On 9/22/2022 8:59 AM, Mikolaj Pawlak wrote: > > External Email - Use Caution > Would providing better manual segmentations of those structures of > interest help you in building bet

Re: [Freesurfer] SAMSEG - modification of the template files

2022-09-23 Thread Douglas N. Greve
On 9/22/2022 8:59 AM, Mikolaj Pawlak wrote: External Email - Use Caution Would providing better manual segmentations of those structures of interest help you in building better solutions? I can work with the segmentation that is produced now, but I am interested in improving the res

Re: [Freesurfer] SAMSEG - modification of the template files

2022-09-22 Thread Mikolaj Pawlak
External Email - Use Caution Would providing better manual segmentations of those structures of interest help you in building better solutions? I can work with the segmentation that is produced now, but I am interested in improving the results for extracerebral tissues using multim

Re: [Freesurfer] SAMSEG - modification of the template files

2022-09-21 Thread Douglas N. Greve
by template I'm assuming you mean the atlas. There is not an easy way to create a new atlas or modify the existing one (though we are developing methods to do both). For the eyes, you could probably just write something to look at the column index in the eyes. If it is less than 128, then set i

[Freesurfer] SAMSEG - modification of the template files

2022-09-21 Thread Mikolaj Pawlak
External Email - Use Caution Dear Freesurfers, I have been using samseg for a while and like it a lot. Thank you for this tool. How do you modify the template for this tool? Is there a guideline for this? I would like to divide Fluid_Inside_Eyes label to left and right and improve