Re: [Freesurfer] Running flame on mris_preproc output

2006-12-06 Thread Doug Greve
Just rerun mris_preproc with the copevar as input instead of the cope. You can also do the same thing with the mask. One thing you have to watch out for is that you set up flame to not try to perform any spatial operations (eg, estimating the fwhm or clustering) as it will try to interpret the su

[Freesurfer] Running flame on mris_preproc output

2006-12-05 Thread Luetcke, Henry
Hi all, I used mris_preproc to generate a surface file from 4 feat directories, as described in the tutorial: mris_preproc --out lh.cope1.nii.gz --target fsaverage --hemi lh \ --iv fbert1.feat/stats/cope1.nii.gz fbert1.feat/reg/freesurfer/anat2exf.register.dat --iv fbert2.feat/stats/cope1.nii.gz