Re: [Freesurfer] Resampling cerebellum atlas to fmriprep outcome

2018-06-06 Thread zuxfoucault Wong
External Email - Use Caution I found whether procedure 1 or 3 produced the misaligned result. Did I miss some steps? [image: bbregister_misalign.png] Best, Foucault On Tue, Jun 5, 2018 at 3:52 PM zuxfoucault Wong wrote: > Thanks Douglas! > > I also got replies from the author o

Re: [Freesurfer] Resampling cerebellum atlas to fmriprep outcome

2018-06-05 Thread zuxfoucault Wong
External Email - Use Caution Thanks Douglas! I also got replies from the author of fmriprep. Post his reply as the following link for future reference. https://neurostars.org/t/resampling-cerebellum-atlas-to-fmriprep-outcome/1778 Regards, Foucault On Tue, Jun 5, 2018 at 6:29 AM

Re: [Freesurfer] Resampling cerebellum atlas to fmriprep outcome

2018-06-04 Thread Douglas N. Greve
On 06/04/2018 04:01 AM, zuxfoucault Wong wrote: > > > Hi Freesurfer experts, > > I am trying to resample the cerebellum atlas > Buckner2011_17Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz > to fmriprep output volume > ${sub}_task-rest_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz.

[Freesurfer] Resampling cerebellum atlas to fmriprep outcome

2018-06-04 Thread zuxfoucault Wong
External Email - Use Caution Hi Freesurfer experts, I am trying to resample the cerebellum atlas Buckner2011_17Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz to fmriprep output volume ${sub}_task-rest_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz. I was wondering if the