Well, .3mm is still 30%, which means that your brains will show up 30%
smaller/larger. This could mess up any number of things. Unfortunately,
the right answer is to fix your data then re-run everything. Try using
FreeSurfer's mri_convert to convert from dicom. You can also just pass
the dicom
One more thing that might be useful: for my current dataset, everything was
processed in FreeSurfer 4.3.1.
Thank you,
Jeff
On Mon, Mar 7, 2011 at 12:41 PM, Jeff Sadino wrote:
> Hello,
>
> I have a question about the effects of FreeSurfer's resampling algorithms.
> The way our pipeline goes is t
Hello,
I have a question about the effects of FreeSurfer's resampling algorithms.
The way our pipeline goes is that we convert our DICOM images into .nii.gz
format using FSL tools. One of the commands we use is FSLCPGEOM. I was
never sure why, but our script would always break without it. Look
