Try using this version of mri_segstats
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats
doug
On 03/20/2013 01:10 PM, Laura M. Tully wrote:
> the mri_segstats command did not work - below is the command and
> output. It looks like it is searching for the .annot file in fs
the mri_segstats command did not work - below is the command and output. It
looks like it is searching for the .annot file in fsaverage directory. How
do I tell it to use fsaverage and to look for the .annot elsewhere?
cd glmdir
mri_segstats --i beta.mgh --annot fsaverage lh
./SZcontrast_oneGrp_o
On 03/20/2013 12:09 PM, Laura M. Tully wrote:
> Sorry - meant to respond to list.
>
> Thanks for the response Doug - I have a few follow up questions I hope
> you can clarify:
>
> * is the xxx.ocn.annot file created by mri_glmfit-sim considered
> a "label" by freesurfer?
>
It is an
Sorry - meant to respond to list.
Thanks for the response Doug - I have a few follow up questions I hope you
can clarify:
>
>- is the xxx.ocn.annot file created by mri_glmfit-sim considered a
>"label" by freesurfer? or does it need to be converted to a label before I
>can use mri_seg
On 03/20/2013 10:17 AM, Laura M. Tully wrote:
> Hi,
>
> I wanted to re-post my questions from a couple of days ago below, but
> with some more specific questions following a search through the
> archives.
>
> I want to be able to extract the beta values from a cluster identified
> using mc-z in
Hi,
I wanted to re-post my questions from a couple of days ago below, but with
some more specific questions following a search through the archives.
I want to be able to extract the beta values from a cluster identified
using mc-z in a group by behavioral variable interaction so that I can 1)
plo
