From: Sita Kakunoori [mailto:s...@nmr.mgh.harvard.edu]
> Sent: Tuesday, August 04, 2009 12:33 PM
> To: Elizabeth Selgrade
> Cc: 'Martin Reuter'; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Registering aseg to base for volume overlap
> calc ulations
>
>
>
mailto:s...@nmr.mgh.harvard.edu]
> Sent: Tuesday, August 04, 2009 12:33 PM
> To: Elizabeth Selgrade
> Cc: 'Martin Reuter'; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Registering aseg to base for volume overlap calc
> ulations
>
>
> Hi Liz
suggestions for what
might be going on?
Thank you!
Liz
-Original Message-
From: Sita Kakunoori [mailto:s...@nmr.mgh.harvard.edu]
Sent: Tuesday, August 04, 2009 12:33 PM
To: Elizabeth Selgrade
Cc: 'Martin Reuter'; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Registerin
ent tool that I should be using to apply the transform?
>
> Thank you for your help!
> Liz Selgrade
>
>
>
> -Original Message-
> From: Martin Reuter [mailto:mreu...@nmr.mgh.harvard.edu]
> Sent: Monday, August 03, 2009 5:28 PM
> To: Elizabeth Selgrade
> Cc: frees
Re: [Freesurfer] Registering aseg to base for volume overlap calc
ulations
Liz,
to be precise, this is true for the standard FS stream.
The longitudinal stream is different, as in FS 4.4 the base actually lives
in two similar, but slightly different spaces, because the template is
created for T1 and re
Liz,
to be precise, this is true for the standard FS stream.
The longitudinal stream is different, as in FS 4.4 the base actually
lives in two similar, but slightly different spaces, because the
template is created for T1 and recreated for the norm.mgz. The aseg is
in the space of the norm and th
Its in the native space of the TP (orig, nu, T1, norm, brainmask, aseg,
brain .. all in the same space).
-Martin
On Mon, 2009-08-03 at 16:40 -0400, Elizabeth Selgrade wrote:
> Hi Martin,
>
> Thanks for the quick response. I have a follow-up question: In what space
> do the segmentations take pl
