Re: [Freesurfer] Registering Anatomical Parcellation to DWI

2018-12-06 Thread Greve, Douglas N.,Ph.D.
Can you be more specific about which files you want to map into your DWI space? Eg, if you want to map wmparc.mgz, then use mri_label2vol. You will need a registration file which you can obtain with bbregister On 12/05/2018 02:34 AM, Maedeh Khalilian wrote: > > External Email - Use Ca

Re: [Freesurfer] Registering Anatomical Parcellation to DWI

2018-12-05 Thread Yendiki, Anastasia
Yes, you can register other modalities to the T1 using bbregister. Then you can use that registration to transform any volume from T1 space to the space of the other modality. Check out the multimodal integration tutorials on the freesurfer wiki. On Dec 5, 2018 2:36 AM, Maedeh Khalilian wrote

[Freesurfer] Registering Anatomical Parcellation to DWI

2018-12-04 Thread Maedeh Khalilian
External Email - Use Caution Dear FreeSurfer experts, I have a parcellation and a whole brain white matter files which are the outputs of FreeSurfer. I want to register them to my DWI. I mean I want my parcellation and white matter to be in the physical space of my DWI. Can Free