Re: [Freesurfer] Register.dof

2015-03-06 Thread Xiaomin Yue
Thanks. The new freeview can create correct register file Xiaomin On Mon, Mar 2, 2015 at 11:06 AM -0800, "Douglas N Greve" wrote: On 02/18/2015 09:54 PM, Xiaomin Yue wrote: > Hi Doug, > > Thanks for your response. I did run bbregister to register the EPI to > T1, but it did not resample t

Re: [Freesurfer] Register.dof

2015-03-02 Thread Douglas N Greve
On 02/18/2015 09:54 PM, Xiaomin Yue wrote: > Hi Doug, > > Thanks for your response. I did run bbregister to register the EPI to > T1, but it did not resample the EPI to T1 space, just generated a > register.dof6.dat file, which is expected according to the help > document. Also, the help docu

Re: [Freesurfer] Register.dof

2015-02-18 Thread Xiaomin Yue
Hi Doug, Thanks for your response. I did run bbregister to register the EPI to T1, but it did not resample the EPI to T1 space, just generated a register.dof6.dat file, which is expected according to the help document. Also, the help document of bbregister doesn’t indicate resampling or sort

Re: [Freesurfer] Register.dof

2015-02-18 Thread Douglas Greve
Yes, if you've run the T1 through recon-all, then you can use bbregister to create a registration between the two. It will also resample to the T1 space, but you can also use mri_vol2vol to do so too. doug On 2/18/15 5:43 PM, Xiaomin Yue wrote: Hi, I like to transfer a epi file to a T1 spa

[Freesurfer] Register.dof

2015-02-18 Thread Xiaomin Yue
Hi, I like to transfer a epi file to a T1 space. Is it possible? Thanks, Xiaomin On Tue, Feb 17, 2015 at 1:13 PM -0800, "Douglas Greve" wrote: We don't have anything to do this directly. However, we do have this tool: http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi See if that meets your ne