Re: [Freesurfer] Reconstructing cerebellum in FreeSurfer 5.3

2016-11-24 Thread Bruce Fischl
Hi Alex there are labels for the cerebellar wm and gm in the aseg.mgz cheers Brue On Wed, 23 Nov 2016, Alexander Zent wrote: > Hi,I have been trying to figure out how to extract and reconstruct the > cerebellum and possible the pons and brain stem. I have already ran recon-all > and extracte

[Freesurfer] Reconstructing cerebellum in FreeSurfer 5.3

2016-11-23 Thread Alexander Zent
Hi, I have been trying to figure out how to extract and reconstruct the cerebellum and possible the pons and brain stem. I have already ran recon-all and extracted the hemispheres but cannot seem to find any documentation on how to extract the other structures. I am running version 5.3 on Windows v