Hi Sinead,
In short, it is most likely a bug. I think the current version of the QA
tools scripts expects a 5.1 recon-all stream, so the output order of files
being slightly different in 5.2/5.3 causes this error/warning to appear.
In the future you should just run QA tools with the -snaps-onl
Dear all,
I have preprocessed my data using Freesurfer v5.2. I have checked the the
recon-all.log for each subject to make sure that the process completed
without error and that all the appropriate files were created. I have also
visually inspected each image. However, when I run recon checker (fr
