Re: [Freesurfer] Recon-all issue with decompressing in mri_convert step

2022-09-06 Thread Douglas N. Greve
There might be some issues with jpeg compressed dicom files in 7.2 and before. Can you try using 7.3 to do the conversion with mri_convert or dcmunpack (add -dcm2niix to either one to get the new, better code). On 9/5/2022 10:53 PM, Beatrice Everall wrote: External Email - Use Caution

[Freesurfer] Recon-all issue with decompressing in mri_convert step

2022-09-05 Thread Beatrice Everall
External Email - Use Caution - Hi there :) - I am trying to run recon-all on MRI data; I have multiple sequences including T1 maps and MAGiC. I have tried to run recon-all on these sequences but get the same error each time: - - ERROR: 512, see /tmp/tmp.H88WWu.dcmdjpeg.out for more