Re: [Freesurfer] Recon-all error after El Capitain update

It's hard to fully diagnose, without the command you called, but it looks like you have your SUBJECTS_DIR and SUBJECT variable wrong, and perhaps command syntax. Take another look at your command. hth d On Thu, Jul 7, 2016 at 2:59 AM, wrote: > Hi list, > > after update with El Capitain, recon-a

[Freesurfer] Recon-all error after El Capitain update

Hi list, after update with El Capitain, recon-all -all produce the error reported below. Thanks srclabel = /Applications/freesurfer/subjects/subject_prova/subj/fsaverage/label/lh.BA1.label srcsubject = fsaverage trgsubject = SUBJECTS_DIR trglabel = ./lh.BA1.label regmethod = surface srchemi = l