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Hello Lauren:
Open the sR0391178-0002-1-000208-01.nii.gz file using freeview and see
if the whole 3D brain is in place. This should give you a clue as to why
this occurred.
best,
Alan
On Wed, Sep 13, 2023 at 1:02 PM Lauren Stephens
wrote:
>
Sent: Wednesday, September 13, 2023 2:11 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Recon-all completed without error in 10 seconds
External Email - Use Caution
Hi Yujing,
Thank you, that did work!
Follow up question: Why would the code I used above, successfully generate the
re
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I think you need to pass the flag ‘-all’ in the command line.
recon-all -s 967 -i
/Users/corpuscallosum/Desktop/subjects/sR0391178-0002-1-000208-01.nii.gz
-all
Nárlon Cássio
Nárlon Cássio Boa Sorte Silva PhD (He, Him, His)
CIHR and MSHR BC/CLEA
support list
Subject: Re: [Freesurfer] Recon-all completed without error in 10 seconds
External Email - Use Caution
Hi Lauren,
You will also need to specify ‘-all’ to recon-all.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Lauren Stephens
Sent
du
Subject: [Freesurfer] Recon-all completed without error in 10 seconds
External Email - Use Caution
Hi Freesurfers,
I am attempting to run recon-all on a set of .nii.gz files. Each file is in
our subject directory and has run through recon-all. Recon-all only takes 10
seconds to run and s
External Email - Use Caution
Hi Freesurfers,
I am attempting to run recon-all on a set of .nii.gz files. Each file is in
our subject directory and has run through recon-all. Recon-all only takes 10
seconds to run and says it was completed without errors. When I go to the
fol
