Hi Bruce,
Thanks, that would be perfect!
I tried increasing the number of smoothing iterations in mris_smooth,
and this improves the result, but this is probably not the best way to
do it.
We would be very happy if you could send us a beta version of your
smoothing tools.
Cheers,
Kim.
2007/11
Hi Kim,
we do have some tools for smoothing the hippocampal surfaces, but we
haven't distributed them. I could try to get you a beta version if you
like.
cheers,
Bruce
On Fri, 16 Nov 2007, Kim Mouridsen wrote:
Hi Nick,
The Freesurfer version I use has build stamp
freesurfer-Darwin-tiger-i6
Hi Nick,
The Freesurfer version I use has build stamp
freesurfer-Darwin-tiger-i686-stable-pub-v4.0.1
After conversion, read_asc.m doesn't work - seemingly due to a
dimension problem. In the code I see that 5 elements are expected for
faces and indicies, whereas only 4 elements are provided in the
Kim,
Which version of freesurfer is being used?
An alternative approach is to convert the surface to ascii:
mris_convert surface_file surface_file.asc
where the .asc extension is an output ascii file listing the vertices
and faces.
Nick
On Thu, 2007-11-15 at 16:18 +0100, Kim Mouridsen wrote
Hi,
We have segmented hippocampus using Freesurfer, and want to generate a
surface which can be read into matlab.
We use mri_tesselate and mris_smooth. However, the resulting file can
not be read into matlab using read_surf. The error we get is
??? Undefined function or variable "vertex_coords".
