Re: [Freesurfer] REPOST: How to Convert QDEC clusters to standard MNI_152_T1 space

2012-08-27 Thread Antonella Kis
sig2MNI.nii Many thanks, Antonella From: Douglas Greve To: freesurfer@nmr.mgh.harvard.edu Sent: Monday, August 27, 2012 10:23 AM Subject: Re: [Freesurfer] REPOST: How to Convert QDEC clusters to standard MNI_152_T1 space You should use mri_label2vol. If you want

Re: [Freesurfer] REPOST: How to Convert QDEC clusters to standard MNI_152_T1 space

2012-08-27 Thread Douglas Greve
You should use mri_label2vol. If you want to do it label by label, then you need to convert the cluster annotation (the .annot file) into labels with mri_annotation2label. Or you can feed the annotation directly into mri_label2vol to create a segmentation volume. You don't need to specify a s

[Freesurfer] REPOST: How to Convert QDEC clusters to standard MNI_152_T1 space

2012-08-27 Thread Antonella Kis
Hi,  I want to overlay  my QDEC clusters on the connectivity maps in FSL  on the MNI ( this is the template I use for my connectivity maps). I am not sure how I can mention the label of my clusters, the uncorrected clusters. Should I use the sig.mgh as subject id, my clusters were obtain

[Freesurfer] REPOST: How to Convert QDEC clusters to standard MNI_152_T1 space

2012-08-23 Thread Antonella Kis
Hi,  I want to overal  my QDEC clusters on the connectivity maps in FSL  on the MNI ( this is the template I use for my connectivity maps). I am not sure how I can mention the label of my clusters, the uncorrected clusters. Should I use the sig.mgh as subject id, my clusters were obtained fro