Re: [Freesurfer] RE : TR : recon-all exited with ERRORS in Talairach

2016-12-02 Thread Z K
Im not sure I follow what you mean when you say "the file convert into a text file." The FREESURFER_HOME/mni/bin/nu_correct file is a text file (its a script). Try making sure that it is still executable: $> chmod a+x $FREESURFER_HOME/mni/bin/nu_correct On 12/02/2016 02:31 PM, jean-simon.bo

[Freesurfer] RE : TR : recon-all exited with ERRORS in Talairach

2016-12-02 Thread jean-simon.boucher.1
Hi Zeke, I'm trying to make modification on the first line of nu_correct (perl file) and when I do the modification the file convert into a text file. I've tried to run freesurfer with the text file but I got a message of nu_correct command not found at the begining of the process. Do you hav