Unless you're comparing groups in a pairwise manner, i.e., A vs B, B vs
C, and A vs C. In that case, you would have 18 x 3 comparisons and the
threshold for significance would be 0.05 / (18 x 3)
Cheers,
/Eugenio
On Mon, 2014-03-24 at 17:50 -0400, Juan Eugenio Iglesias wrote:
> Hi again,
> if you p
Hi again,
if you perform the same analysis over and over for each of the 18
tracts, then the Bonferroni corrected p-value would be 0.05/18
Cheers,
/Eugenio
On Mon, 2014-03-24 at 22:47 +0100, std...@virgilio.it wrote:
> Ciao Eugenio,
>
>
> thank you very much for your prompt and kind response.
>
Ciao Eugenio,
thank you very much for your prompt and kind response.Yes, I'm looking average
over the entire support of the path distribution and their differences among 2
pathological and 1 control groups.I haven't a strong hypothesis.When I
performed MANOVA, Tukey or Bonferroni post hoc find d
Are you running this with only one subject? What are you trying to do? The
purpose of this step is to combine measures from multiple subjects.
On Fri, 27 Dec 2013, std...@virgilio.it wrote:
I'm sorry and I'm attaching the files.Thanks,
Stefano
trac-all -stat -c $FREESURFER_HOME/Control0
What do you get when you run "echo $SUBJECTS_DIR"?
On Thu, 6 Jun 2013, std...@virgilio.it wrote:
Hi Anastasia,
yes, I have check the SUBJECTS_DIR. I do not understand why all previous
configuration file start normally and this no.
Do you note some line that might be wrong additionally to sete
Hi Anastasia,
yes, I have check the SUBJECTS_DIR. I do not understand why all previous
configuration file start normally and this no.Do you note some line that might
be wrong additionally to setenv SUBJECTS_DIR line.
Stefano
Messaggio originale
Da: ayend...@nmr.mgh.harvard.edu
Data:
0.9~1/RELEASE_X86_64 x86_64
> > trac-preproc exited with ERRORS at Tue Feb 5 07:54:09 CET 2013
> > Why? Can it depends from the files in the original folder Diff01? Please,
> > if yes, may you explain which is the better arrangement of the MPRAGE and
> > DWI in the folders.
R:
> > must specify brain mask volume for output subjectDarwin
> > iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18
> > 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64
> > trac-preproc exited with ERRORS at Tue Feb 5 07:54:09 CET 2013
> >
Thu Oct 18
> > 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64
> > trac-preproc exited with ERRORS at Tue Feb 5 07:54:09 CET 2013
> > Why? Can it depends from the files in the original folder Diff01? Please,
> > if yes, may you explain which is the better arrang
No, putting your T1 in a folder is not the same as running freesurfer on
it. You need to run recon-all on your T1. This is a piece of software that
will segment your T1 (among other things). Tracula will need that
segmentation to reconstruct your tracts.
On Sun, 3 Feb 2013, std...@virgilio.i
Hi Anastasia,
I have put T1 in /Applications/freesurfer/subjects/subject_prova/Diff01/
together data.nii.gz, bvals and bvecs.My
$SUBJECTS_DIR=$FREESURFER_HOME/subjects/subject_provaT1 was called as
T1_01.nii.gz. This is well done?
Thanks,
Stefano
Messaggio originale
Da: ayend...@nmr.mg
Hi and thank you very much for your availability. Now, I'm running tracula as
following:
trac-all -prep -c /Applications/freesurfer/subjects/subject_prova/CON_01
my CON_01 forder contains: data.nii.gz (DWI), bvals and bvecs (as used in>
previous FSL analysis) and T1-images.nii.gz. File.niii.gz ar
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