[Freesurfer] R: Re: Recon-all error after El Capitain update

2016-07-11 Thread stdp82
This is the command and the error line. Thanks. Stefano recon-all -all -i $SUBJECTS_DIR/T1_STRUCT.nii.gz -subject SUBJECTS_DIR # INFO: fsaverage subject does not have perirhinal labels! \n cd /Applications/freesurfer/subjects/subject_prova/Control89;

Re: [Freesurfer] R: Re: Recon-all error

2015-12-26 Thread zkaufman
You need to provide input data for the subject. This would either go in the 150622fracal/mri/orig folder or use the -i flag to point to the input file. -Zeke > After this command > recon-all -all -s 150622fracal -hippocampal-subfields-T1 > > this error come out: > > Applications/freesurfer/subje

[Freesurfer] R: Re: Recon-all error

2015-12-26 Thread stdp82
After this command recon-all -all -s 150622fracal -hippocampal-subfields-T1 this error come out: Applications/freesurfer/subjects/150622fracal/scripts/recon-all.log Darwin iMac-di-Stefano.local 14.5.0 Darwin Kernel Version 14.5.0: Tue Sep 1 21:23:09 PDT 2015; root:xnu-2782.50.1~1/RELEASE_X86_64