Great!
You can use the command "samseg" with the flag "--recon" instead of
"run_samseg". This will first run SAMSEG to obtain a whole-brain segmentation,
then recon-all will use this segmentation to perform surface analysis and
cortical parcellation -- instead of using ASEG segmentation. Look a
Hi Giulio,
I'm not sure I understand what your goal is. Are you just trying to visualize
specific brain structures over your input image? Are you interested in
segmentation maps or binary segmentations?
If you want to visualize segmentation maps, you can just use Freeview and load
the specific
