Hi Andy,
control points only affect mri_normalize (and only if you run it with -f
../tmp/control.dat). You should rerun it. Make sure to save your brain
volume so you don't have to fix the skull stripping. You can then redo the
stripping via (from the mri dir):
mri_convert brain brain_mask.m
Fellow FreeSurfers,
I have a few (more) questions regarding high-res monkey reconstructions. Forgive my naivete - I'm still quite new to this program:
I've managed to strip the skull and surrounding muscle tissue (mri_watershed -r 60 -h 15 -wat did the trick)
I am now trying to segment, fill
