edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Wednesday, October 19, 2016 10:48 AM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] Question regarding: Binary label map to skull strip
> brains
>
> Hi Sarina
>
> the skull stripping is
]
Sent: Wednesday, October 19, 2016 10:48 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Question regarding: Binary label map to skull strip
brains
Hi Sarina
the skull stripping is done by combining a deformable surface with a
watershed algorithm not with a label mask. The volume
gh.harvard.edu]
> Sent: Wednesday, October 19, 2016 10:48 AM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] Question regarding: Binary label map to skull strip
> brains
>
> Hi Sarina
>
> the skull stripping is done by combining a deformable surface with
Hi Sarina
the skull stripping is done by combining a deformable surface with a
watershed algorithm not with a label mask. The volume brainmask.mgz can
be used to specify what is in brain (voxels >5) and what is not in brain
(voxels < 5)
cheers
Bruce
On Wed, 19 Oct 2016, Karmacharya, Sarina w
Dear Freesurfer team,
I have a questions for you regarding the binary masks (labels maps) that
freesufer uses to skull strip the brain in the first part of recon-all.
I was wondering if freesurfer stores/saves this label mask that it uses to
skullstrip? If so what would be the naming convention
