If you run
mri_segstats --qa-stats subject subject.qa.dat
It will generate the QA .dat file. This will have 20 numbers in it. Run
mri_segstats --help to see what they are. I usually use #20 (CNR)
Run it for all your subjects, then sort by CNR, then examine the worse
subjects
On 10/4/2022 10:24
External Email - Use Caution
Hi all,
I am processing a large longitudinal dataset of T1-weighted anatomical
images through the recon-all pipeline (N=680). I know that the gold
standard for quality control following recon-all is visual inspection of
the output surfaces and parcella
