Hi Louis
I manage to replicate the error by using wm-anat-snr directly on bert
in /usr/local/freesurfer/subjects. I think think the error is in
wm-anat-snr and it interactions with mri_segstats.
mri_segstats -all-info
ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion:
$N
Hi Knut,
It should run by default. Did you check the summary log file,
$SUBJECTS_DIR/QA/recon_checker.ALL.summary.log? Otherwise, could you send
the terminal output when you run QAtools on a single subject?
-Louis
On Sun, 14 Oct 2012, Knut J Bjuland wrote:
> Hi,
>
> I have downloaded the lat
Hi,
I have downloaded the latest QA_tools v1.1 from
http://surfer.nmr.mgh.harvard.edu/fswiki/QATools. However, when I ran
recon_checker, I did not get a signal to noise calculations. I ran
recon_checker with -s-dir subjectfile and -snaps-detailed. Is there any option
that I missed? Is it poss
