Re: [Freesurfer] QA Tools Snaps Scrambled - Follow up

2013-01-12 Thread Louis Nicholas Vinke
rgb' is garbage. Any ideas on this? Thanks, Wil -Original Message- From: Irwin, William Sent: Wednesday, January 09, 2013 6:22 AM To: Louis Nicholas Vinke Cc: freesurfer@nmr.mgh.harvard.edu; Irwin, William Subject: RE: [Freesurfer] QA Tools Snaps Scrambled - Clairification Hi Lo

Re: [Freesurfer] QA Tools Snaps Scrambled - Follow up

2013-01-10 Thread Irwin, William
n this? Thanks, Wil -Original Message- From: Irwin, William Sent: Wednesday, January 09, 2013 6:22 AM To: Louis Nicholas Vinke Cc: freesurfer@nmr.mgh.harvard.edu; Irwin, William Subject: RE: [Freesurfer] QA Tools Snaps Scrambled - Clairification Hi Louis- I was speaking cryptically an

Re: [Freesurfer] QA Tools Snaps Scrambled - Clairification

2013-01-09 Thread Irwin, William
To: Louis Nicholas Vinke Cc: freesurfer@nmr.mgh.harvard.edu; Irwin, William Subject: RE: [Freesurfer] QA Tools Snaps Scrambled Hi Louis- No problem doing command line conversion of an rgb to either jpg or gif in terms of error messages. However, the converted files are scrambled. Might there be a dep

Re: [Freesurfer] QA Tools Snaps Scrambled

2013-01-09 Thread Irwin, William
-contained. This is a real mystery -Wil -Original Message- From: Louis Nicholas Vinke [mailto:vi...@nmr.mgh.harvard.edu] Sent: Tuesday, January 08, 2013 6:29 PM To: Irwin, William Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QA Tools Snaps Scrambled Hi Irwin, It sounds

Re: [Freesurfer] QA Tools Snaps Scrambled

2013-01-08 Thread Louis Nicholas Vinke
Hi Irwin, It sounds like the snapshots from tksurfer are fine, but the ones from tkmedit are not being generated properly. It may be this peculiar bug where ImageMagick has trouble reading rgb files. Try converting an rgb file to a jpg 'convert file.rgb file.jpg'. You may get the error 'Impr

[Freesurfer] QA Tools Snaps Scrambled

2013-01-08 Thread Irwin, William
Hi- I've come across a peculiar behavior with recon_checker, and am hoping someone can shed some light on this. I have used it 100's of times in the past, but not for about 2 months. I recently processed a large set of cases I wanted to QC. When I ran it, some, but not all, of the snaps were c