Dear all,
I'm using QA_tools v1.2 to check the recon-all processes for my subjects.
I'm getting the following lines in my terminal window while performing QA
on some subjects:
Processing each subcortical label ...
(standard_in) 1: syntax error
(standard_in) 1: syntax error
(standard_in) 1: syntax
Hi Scott,
If you send me your subject, I can take a look.
https://gate.nmr.mgh.harvard.edu/filedrop2/
Best,
Lee
On Thu, 24 Sep 2015, Scott Quadrelli wrote:
Hi All,
I have a question re: the free surfer QA tool. I have run the script for
several subjects and notice that the talairach registr
Hi Efrat,
To look for aseg outliers you'll need to generate a aseg lookup table
based on all the subjects in your dataset (-gen-asegLUT). Additionally,
in the current version some of the labels the script uses are old and no
longer appear in the aseg generated by recon-all, so they will be 0 +
Dear FreeSurfer expert,
I am using Freesurfer version 5.1.0. After I run the QA Tool and check my
data, I am getting 39 outliers or more for each subject. When I look at the
AsegMeans and DefaultAsegMeans files in the QATool library, i see that the
mean values in these file for each anatomical lab
Hi Efrat,
You need to install ImageMagick Studio version 6.2.8 or higher. See
website below for downloading.
http://www.imagemagick.org/script/index.php
-Louis
On Thu, 1 Nov 2012, Efrat Kliper wrote:
Dear Freesurfer expert,
I am using Freesurfer version 5.1.0.
I am dealing with some prob
Dear Freesurfer expert,
I am using Freesurfer version 5.1.0.
I am dealing with some problems with recon_checker command.
I cannot open the html file to see the figures. The command generates the
images but they are not saved.
It is written that:
*converting snapshots to tiff and making html page..
