Re: [Freesurfer] Projecting FA map onto fsaverge surface

2016-08-19 Thread Taha Abdullah
Great! looks good, thanks for the help. Enjoy your weekend! On Fri, Aug 19, 2016 at 11:34 AM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Taha - Once you've mapped from the volume onto the white surface, you > should be able to display it on the inflated surface, and also to

Re: [Freesurfer] Projecting FA map onto fsaverge surface

2016-08-19 Thread Anastasia Yendiki
Hi Taha - Once you've mapped from the volume onto the white surface, you should be able to display it on the inflated surface, and also to get thickness statistics (thickness is just the distance between corresponding points on the white and pial surface). You don't need to do anything to map

Re: [Freesurfer] Projecting FA map onto fsaverge surface

2016-08-19 Thread Taha Abdullah
Excellent! Thank you for the quick advice, I tried this initially but I was using the wrong xfm format. Since I have the FA map in subject ?h.white space, I have done the same with the tract endings too. I am having some difficulties conceptually, in terms of projecting the end points onto either

Re: [Freesurfer] Projecting FA map onto fsaverge surface

2016-08-19 Thread Anastasia Yendiki
Hi Taha - Trying getting a .dat registration file from bbregister and using that as the input to mri_vol2surf. There's a multimodal tutorial on the freesurfer wiki that might be of help. Best, a.y On Thu, 18 Aug 2016, Taha Abdullah wrote: Hello All, I am trying to project FA map (dtifit_F