Re: [Freesurfer] Problems with manual grey matter editing

2014-10-01 Thread Bruce Fischl
Hi Marta I don't see anything obviously wrong in your image, but it is hard to tell dura from gray matter in a single slice. If you upload the subject dir we will take a look. Usually you only need to add gray matter voxels back to the brainmask.mgz if there was a skull stripping problem. Is

[Freesurfer] Problems with manual grey matter editing

2014-09-30 Thread Zamroziewicz, Marta Karolina
Hello, We have some reconstructions with a significant amount of grey matter excluded in the temporal cortex and are having problems using manual voxel editing to fix this. Our correction process for brain tissue that wasn’t included in the pial/white matter outlines has been as follows: 1. Whe