Hi Rosalia
once you have imported the data for a subject with -i , you
shouldn't specify it for subsequent analyses
cheers
Bruce
On Fri, 19 Oct 2018, Rosalia Dacosta
Aguayo wrote:
External Email - Use Caution
Dear FreeSurfer team,
I am trying to run recon -all -autoreco
esurfer-boun...@nmr.mgh.harvard.edu] *Im Auftrag von *Rosalia Dacosta
> Aguayo
> *Gesendet:* Freitag, 19. Oktober 2018 14:40
> *An:* Freesurfer support list
> *Betreff:* Re: [Freesurfer] Problems to run -autorecon2
>
>
>
> *External Email - Use Caution*
>
Gesendet: Freitag, 19. Oktober 2018 14:40
An: Freesurfer support list
Betreff: Re: [Freesurfer] Problems to run -autorecon2
External Email - Use Caution
Dear Falk,
Thank you very much.
Once last question: what would happen if I did run -autorecon1 without the
flags: -qcache -openmp 8
essing your data, as this flag tells
> FreeSurfer to create a new subject folder (which already exists and
> therefore give an error).
>
>
>
> Best,
>
> Falk
>
>
>
>
>
> *Von:* freesurfer-boun...@nmr.mgh.harvard.edu [mailto:
> freesurfer-boun...@nmr.mgh
Von: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Rosalia Dacosta
Aguayo
Gesendet: Freitag, 19. Oktober 2018 14:10
An: Freesurfer support list
Betreff: Re: [Freesurfer] Problems to run -autorecon2
External Email - Use Caution
r.mgh.harvard.edu] *Im Auftrag von *Rosalia Dacosta
> Aguayo
> *Gesendet:* Freitag, 19. Oktober 2018 11:11
> *An:* Freesurfer support list
> *Betreff:* [Freesurfer] Problems to run -autorecon2
>
>
>
> *External Email - Use Caution*
>
> Dear FreeSurfer team,
: [Freesurfer] Problems to run -autorecon2
External Email - Use Caution
Dear FreeSurfer team,
I am trying to run recon -all -autorecon2 using the following command line:
recon-all -sd ~/Desktop/MS_STUDY/subjects -s 001 -i
/home/rosalia/Desktop/MS_STUDY/subjects/001 -autorecon2
It is
External Email - Use Caution
Dear FreeSurfer team,
I am trying to run recon -all -autorecon2 using the following command
line: *recon-all -sd ~/Desktop/MS_STUDY/subjects -s 001 -i
/home/rosalia/Desktop/MS_STUDY/subjects/001 -autorecon2*
It is the same command I used yesterday t
