Re: [Freesurfer] Problem with sxconcat-sess

2022-07-10 Thread Douglas N. Greve
k you in advance for your help. Best wishes, Noah *From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Wighton, Paul *Sent:* 28 June 2022 11:10 *To:* Freesurfer support list *Subject:* Re: [Freesurfer] Problem w

Re: [Freesurfer] Problem with sxconcat-sess

2022-07-04 Thread Wighton, Paul
support list Subject: Re: [Freesurfer] Problem with sxconcat-sess Hi Paul, The PCC_BOLD is just a directory name used for the analysis. Please find the dof attached. Thanks for your help. Best wishes, Noah From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of

Re: [Freesurfer] Problem with sxconcat-sess

2022-07-01 Thread Shapiro, Noah Lorenz
support list Subject: Re: [Freesurfer] Problem with sxconcat-sess Hi Noah, These dof files were not created by recon-all. I was hoping there would be other log files in the scripts directory describing the functional analysis. I have no idea what these dof files are, but they look to be either

Re: [Freesurfer] Problem with sxconcat-sess

2022-06-30 Thread Wighton, Paul
er support list Subject: Re: [Freesurfer] Problem with sxconcat-sess Hi Paul, Thanks for your suggestion. I examined all files within the /script directory from recon-all from two subjects where one subject created a dof, and another did not generate a dof. I used the vimdiff command

Re: [Freesurfer] Problem with sxconcat-sess

2022-06-28 Thread Wighton, Paul
d post any differences you find? -Paul From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Shapiro, Noah Lorenz Sent: Tuesday, June 28, 2022 8:35 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Problem with sxconcat-sess Hello, I am

[Freesurfer] Problem with sxconcat-sess

2022-06-28 Thread Shapiro, Noah Lorenz
Hello, I am trying to concatenate my functional data with the following command (Ps: I am relatively new to FreeSurfer): sxconcat-sess -sf functional_ID_jun22_allSubjects -analysis PCC_Bold_R -contrast bilateral_isthmuscingulate_bold_config -o DMN_Right. I get an error that says the dof file c