Re: [Freesurfer] Problem with mri_ca_train

2008-12-10 Thread Jason S. Minamora
Sorry, I made a typo. Here's how it should have read: > > I changed the list from > > > > SUBJECTS='a36 A59 f10 f18 f20'; > > ONE_SUBJECT='a36' > > > > to > > > > SUBJECTS='A59 f10 f18 f20 a36'; > > ONE_SUBJECT='A59'; > > GCAupdateNodeCovariance(15, 35, 23, 0): could not find label. (Does th

Re: [Freesurfer] Problem with mri_ca_train

2008-12-10 Thread Bruce Fischl
sorry, not sure I understand. If you put the subject that causes the failure first in the list does it still cause the failure? On Wed, 10 Dec 2008, Jason S. Minamora wrote: Hi Bruce, I changed the list from SUBJECTS='a36 A59 f10 f18 f20'; ONE_SUBJECT='a36' to SUBJECTS='a36 A59 f10

Re: [Freesurfer] Problem with mri_ca_train

2008-12-10 Thread Jason S. Minamora
Hi Bruce, I changed the list from SUBJECTS='a36 A59 f10 f18 f20'; ONE_SUBJECT='a36' to SUBJECTS='a36 A59 f10 f18 f20'; ONE_SUBJECT='a36'; and got the same output, except for the line GCAupdateNodeCovariance(15, 35, 23, 0): could not find label. Using SUBJECTS='A59 f10 f18 f20 a36';

Re: [Freesurfer] Problem with mri_ca_train

2008-12-10 Thread Bruce Fischl
if you change the order of subjects in your list to mri_ca_train does it change anyything? What version are you using? On Wed, 10 Dec 2008, Jason S. Minamora wrote: Hello, I asked about this issue about a month ago, but haven't gotten a response. I'm trying to build a new GCA using th

[Freesurfer] Problem with mri_ca_train

2008-12-10 Thread Jason S. Minamora
Hello, I asked about this issue about a month ago, but haven't gotten a response. I'm trying to build a new GCA using the rebuild_gca_atlas.csh script, with checking disabled (no `-check' flag). My subjects are completely acallosal, and each of the edited segmentation volumes that the scri