Re: [Freesurfer] Problem with FreeSurfer template and control subject

2016-06-03 Thread Mahtab Farahbakhsh
Dear Bruce, Thank you for your response. So would you please guide me how I should register the image into MNI152 coordination? And is the cvs_avg35_inMNI152, the MNI152 template? Best Regards, Mahtab. On 3 June 2016 at 13:48, Bruce Fischl wrote: > Hi Mahtab > > we do all the analysis in nati

Re: [Freesurfer] Problem with FreeSurfer template and control subject

2016-06-03 Thread Bruce Fischl
Hi Mahtab we do all the analysis in native space and don't transform the data to a template (although we do compute mappings to various templates). As for your other question, there are too many variables to control for (age, gender, scanner type, sequence) for us to distribute a normative d

[Freesurfer] Problem with FreeSurfer template and control subject

2016-06-03 Thread Mahtab Farahbakhsh
Dear Freesurfer, The data that I'm using as a part of my study contains only the patients' T1 images and we have not collected any control subjects yet. I want to compare the cortical thickness of these subjects with a template (instead of a control subject), but I'm confused which volume I need t