Re: [Freesurfer] Problem with FS-FAST, mkcontrast

2013-07-02 Thread O'Shea,Andrew
That was my problem Doug, thanks! I used ' sudo ln -s /Applications/MATLAB_R2011b.app/bin/matlab /usr/local/bin ' and it fixed it. -Andrew Message: 9 Date: Mon, 01 Jul 2013 09:46:39 -0400 From: Douglas N Greve mailto:gr...@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Prob

Re: [Freesurfer] Problem with FS-FAST, mkcontrast (Douglas N Greve)

2013-07-01 Thread Douglas N Greve
way check to see if the path is set correctly? > > > > > Message: 9 > Date: Mon, 01 Jul 2013 09:46:39 -0400 > From: Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>> > Subject: Re: [Freesurfer] Problem with FS-FAST, mkcontrast > To: freesurfer@nmr.mgh.harv

Re: [Freesurfer] Problem with FS-FAST, mkcontrast (Douglas N Greve)

2013-07-01 Thread O'Shea,Andrew
fsfasttoolbox); end clear fsfasthome fsfasttoolbox; %-% Is there a way check to see if the path is set correctly? Message: 9 Date: Mon, 01 Jul 2013 09:46:39 -0400 From: Douglas N Greve mailto:gr...@nmr.mgh.harvard.edu>> Subject: Re: [F

Re: [Freesurfer] Problem with FS-FAST, mkcontrast

2013-07-01 Thread Douglas N Greve
doyou have matlab installed and in your path? doug On 07/01/2013 08:55 AM, O'Shea,Andrew wrote: > Hello, > I am trying to work through the FS-FAST tutorial on my data. I am > using OSX 10.6.8 with Freesurfer v. 5.1 When I get to the make > contrast command which I run > ' mkcontrast-sess -anal

[Freesurfer] Problem with FS-FAST, mkcontrast

2013-07-01 Thread O'Shea,Andrew
Hello, I am trying to work through the FS-FAST tutorial on my data. I am using OSX 10.6.8 with Freesurfer v. 5.1 When I get to the make contrast command which I run ' mkcontrast-sess -analysis test -contrast pain-v-rest -a 1 -c 0 ' I get the following output error: " phhp-jcraggs-mb:Project ao