Re: [Freesurfer] Problem with Autorecon all

2010-01-29 Thread Janani Dhinakaran
We do have write permission. It did report low space so we tried changing the space on the virtual box from 8 to 16 MB. Now it doen't even power on. Will try changing it back. On 28 January 2010 15:36, Bruce Fischl wrote: > Hi Jan, > > is there enough space in /usr/local/freesurfer/subjects/jan?

Re: [Freesurfer] Problem with Autorecon all

2010-01-28 Thread Bruce Fischl
Hi Jan, is there enough space in /usr/local/freesurfer/subjects/jan? Do you have write permission? Bruce On Thu, 28 Jan 2010, Janani Dhinakaran wrote: > Hello, > > I encountered a problem with the command > recon-all -s jan -autorecon-all > which is supposed to be for all the steps. A full reco

[Freesurfer] Problem with Autorecon all

2010-01-28 Thread Janani Dhinakaran
Hello, I encountered a problem with the command recon-all -s jan -autorecon-all which is supposed to be for all the steps. A full reconstruction. INFO: set hdr.hist.orient to -1 ERROR: failure writing /usr/local/freesurfer/subjects/jan/mri/tmp-mri_motion_correct.fsl-5574/cor-2.img So I tried flip